{ "_id": "6aaba3003d719c1f8406cb31", "Type": "Package", "Package": "SPCompute", "Title": "Compute Power or Sample Size for GWAS with Covariate Effect", "Version": "1.0.3", "Author": "Ziang Zhang, Lei Sun", "Maintainer": "Ziang Zhang ", "Description": "Fast computation of the required sample size or the\nachieved power, for GWAS studies with different types of\ncovariate effects and different types of covariate-gene\ndependency structure. For the detailed description of the\nmethodology, see Zhang (2022) \"Power and Sample Size\nComputation for Genetic Association Studies of Binary Traits:\nAccounting for Covariate Effects\" .", "License": "GPL (>= 3)", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "Repository": "https://aguerozz.r-universe.dev", "Date/Publication": "2023-01-24 17:19:09 UTC", "RemoteUrl": "https://github.com/aguerozz/spcompute", "RemoteRef": "HEAD", "RemoteSha": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-17 08:00:50 UTC", "User": "root" }, "_user": "aguerozz", "_type": "src", "_file": "SPCompute_1.0.3.tar.gz", "_fileid": "https://r2.ropensci.org/106b46021901fa5461ff40d72a4d5d912077a6b847db9319a4132865cb0f1fd4", "_filesize": 142967, "_sha256": "106b46021901fa5461ff40d72a4d5d912077a6b847db9319a4132865cb0f1fd4", "_expires": "2026-12-26T08:21:18.000Z", "_created": "2026-09-17T08:00:50.000Z", "_published": "2026-09-17T08:21:20.188Z", "_jobs": [ { "job": 105123944350, "time": 147, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10486094858" }, { "job": 105123944321, "time": 146, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10486601413" }, { "job": 105123944402, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10486528157" }, { "job": 105123944551, "time": 130, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10486969033" }, { "job": 105123031012, "time": 194, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10486341574" }, { "job": 105123944371, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10486742040" }, { "job": 105123944332, "time": 94, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10486866721" }, { "job": 105123944407, "time": 113, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10486622224" }, { "job": 105123944392, "time": 95, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10486591384" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331", "_status": "success", "_upstream": "https://github.com/aguerozz/spcompute", "_commit": { "id": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "author": "Ziang Zhang <49107284+AgueroZZ@users.noreply.github.com>", "committer": "Ziang Zhang <49107284+AgueroZZ@users.noreply.github.com>", "message": "version 1.0.3 update\n", "time": 1674580749 }, "_maintainer": { "name": "Ziang Zhang", "email": "aguero.zhang@mail.utoronto.ca" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "Matrix", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "aguerozz", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "aguerozz", "count": 25, "uuid": 49107284 }, { "user": "betsymm", "count": 1, "uuid": 97905970 } ], "_userbio": { "uuid": 49107284, "type": "user", "name": "Ziang Zhang", "followers": 5 }, "_downloads": { "count": 207, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SPCompute" }, "_devurl": "https://github.com/aguerozz/spcompute", "_searchresults": 14, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SPCompute.html" ], "_homeurl": "https://github.com/aguerozz/spcompute", "_realowner": "aguerozz", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2022-04-01" }, { "version": "1.0.2", "date": "2022-09-05" }, { "version": "1.0.3", "date": "2023-01-24" } ], "_exports": [ "check_parameters", "Compute_Power", "Compute_Power_multi", "Compute_Size", "Compute_Size_multi", "convert_preva_to_intercept" ], "_help": [ { "page": "check_parameters", "title": "Check if the parameter list contains all the parameters required for the computation.", "topics": [ "check_parameters" ] }, { "page": "Compute_Power", "title": "Compute the Power of an association study, at a given sample size.", "topics": [ "Compute_Power" ] }, { "page": "Compute_Power_multi", "title": "Compute the Power of an association study at a given sample size, accommodating more than one covariates, using the Semi-Simulation method.", "topics": [ "Compute_Power_multi" ] }, { "page": "Compute_Size", "title": "Compute the sample size of an association study, to achieve a target power.", "topics": [ "Compute_Size" ] }, { "page": "Compute_Size_multi", "title": "Compute the sample size of an association study to achieve a target power for multiple E's, using semi-sim.", "topics": [ "Compute_Size_multi" ] }, { "page": "convert_preva_to_intercept", "title": "Convert the prevalence value to the intercept value beta0.", "topics": [ "convert_preva_to_intercept" ] } ], "_readme": "https://github.com/aguerozz/spcompute/raw/HEAD/README.md", "_rundeps": [ "lattice", "Matrix" ], "_vignettes": [ { "source": "SPCompute-vignette.Rmd", "filename": "SPCompute-vignette.html", "title": "SPCompute", "engine": "knitr::rmarkdown", "headings": [ "Section 1: Compute power/sample size for binary traits", "Section 2: Compute power/sample size for continuous traits", "Section 3: Power/Sample Size Computation with Multiple Covariates" ], "created": "2022-02-28 20:08:07", "modified": "2023-01-24 17:19:09", "commits": 2 } ], "_score": 3.845098040014257, "_indexed": true, "_nocasepkg": "spcompute", "_universes": [ "aguerozz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.3", "date": "2026-09-17T08:02:55.000Z", "distro": "resolute", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/ae343df5292ea00a54a4b7826c396de9827cb2792a8274a228dda1c881871c30", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.6.1", "os": "linux", "version": "1.0.3", "date": "2026-09-17T08:02:56.000Z", "distro": "resolute", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/6bfc08efc6f45de9dee245fd206616289a588d86ce624a7af34837665a216470", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.5.3", "os": "mac", "version": "1.0.3", "date": "2026-09-17T08:16:08.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/258816f0f6e83a5fa7dd11a90c78768bd24c1c7c34dd2b02dcb7662ca92de9ea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.6.1", "os": "mac", "version": "1.0.3", "date": "2026-09-17T08:20:19.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/cd3b9b5a3223a9fc358d91a6ae955c2bb55a228e16a6e4f5fe31a2ad45a6b719", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.3", "date": "2026-09-17T08:03:04.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/14d15c400db9454aaf60d39e7631e91e6332096897e5c4ffd426c9a087f077ad", "status": "success", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.7.0", "os": "win", "version": "1.0.3", "date": "2026-09-17T08:01:55.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/db7b37507d3d85e30cfb55978a6a1e149fb21d12593d1bed454013fcc3d7c8d4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.5.3", "os": "win", "version": "1.0.3", "date": "2026-09-17T08:02:21.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/162e0ad5c85c79a941176455f35be4d80e85ccd1fd763d1cb5b07739d684e875", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" }, { "r": "4.6.1", "os": "win", "version": "1.0.3", "date": "2026-09-17T08:01:57.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "https://r2.ropensci.org/94aa24bdec4ff61eb011ae4a2032c0d88f7c79d58fb244afbeff021bacebd7dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/35197130331" } ] }