{ "_id": "6a1edfa0b401979e73410630", "Type": "Package", "Package": "SPCompute", "Title": "Compute Power or Sample Size for GWAS with Covariate Effect", "Version": "1.0.3", "Author": "Ziang Zhang, Lei Sun", "Maintainer": "Ziang Zhang ", "Description": "Fast computation of the required sample size or the\nachieved power, for GWAS studies with different types of\ncovariate effects and different types of covariate-gene\ndependency structure. For the detailed description of the\nmethodology, see Zhang (2022) \"Power and Sample Size\nComputation for Genetic Association Studies of Binary Traits:\nAccounting for Covariate Effects\" .", "License": "GPL (>= 3)", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "Repository": "https://aguerozz.r-universe.dev", "Date/Publication": "2023-01-24 17:19:09 UTC", "RemoteUrl": "https://github.com/aguerozz/spcompute", "RemoteRef": "HEAD", "RemoteSha": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 07:33:15 UTC", "User": "root" }, "MD5sum": "b93a2ddce70fdc4ee7f135021341a95c", "_user": "aguerozz", "_type": "src", "_file": "SPCompute_1.0.3.tar.gz", "_fileid": "e4de3d98ebf0ff67e8ca0315325906a5fe244ad86e93795e4a266a83ef2f5d98", "_filesize": 141960, "_sha256": "e4de3d98ebf0ff67e8ca0315325906a5fe244ad86e93795e4a266a83ef2f5d98", "_created": "2026-05-20T07:33:15.000Z", "_published": "2026-06-02T13:50:24.745Z", "_distro": "noble", "_jobs": [ { "job": 79086340098, "time": 143, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7103928161" }, { "job": 79086340406, "time": 136, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7103925573" }, { "job": 79086340454, "time": 174, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7103929587" }, { "job": 79086339974, "time": 229, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7103933169" }, { "job": 79086338984, "time": 240, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7103880681" }, { "job": 79086339040, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7359592835" }, { "job": 79086339781, "time": 99, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7103913982" }, { "job": 79086340460, "time": 110, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7103917500" }, { "job": 79086340284, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7103913208" } ], "_buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/aguerozz/spcompute", "_commit": { "id": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "author": "Ziang Zhang <49107284+AgueroZZ@users.noreply.github.com>", "committer": "Ziang Zhang <49107284+AgueroZZ@users.noreply.github.com>", "message": "version 1.0.3 update\n", "time": 1674580749 }, "_maintainer": { "name": "Ziang Zhang", "email": "aguero.zhang@mail.utoronto.ca" }, "_registered": true, "_dependencies": [ { "package": "Matrix", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "aguerozz", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "aguerozz", "count": 25, "uuid": 49107284 }, { "user": "betsymm", "count": 1, "uuid": 97905970 } ], "_userbio": { "uuid": 49107284, "type": "user", "name": "Ziang Zhang" }, "_downloads": { "count": 226, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SPCompute" }, "_devurl": "https://github.com/aguerozz/spcompute", "_searchresults": 13, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SPCompute.html", "manual.pdf" ], "_homeurl": "https://github.com/aguerozz/spcompute", "_realowner": "aguerozz", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2022-04-01" }, { "version": "1.0.2", "date": "2022-09-05" }, { "version": "1.0.3", "date": "2023-01-24" } ], "_exports": [ "check_parameters", "Compute_Power", "Compute_Power_multi", "Compute_Size", "Compute_Size_multi", "convert_preva_to_intercept" ], "_help": [ { "page": "check_parameters", "title": "Check if the parameter list contains all the parameters required for the computation.", "topics": [ "check_parameters" ] }, { "page": "Compute_Power", "title": "Compute the Power of an association study, at a given sample size.", "topics": [ "Compute_Power" ] }, { "page": "Compute_Power_multi", "title": "Compute the Power of an association study at a given sample size, accommodating more than one covariates, using the Semi-Simulation method.", "topics": [ "Compute_Power_multi" ] }, { "page": "Compute_Size", "title": "Compute the sample size of an association study, to achieve a target power.", "topics": [ "Compute_Size" ] }, { "page": "Compute_Size_multi", "title": "Compute the sample size of an association study to achieve a target power for multiple E's, using semi-sim.", "topics": [ "Compute_Size_multi" ] }, { "page": "convert_preva_to_intercept", "title": "Convert the prevalence value to the intercept value beta0.", "topics": [ "convert_preva_to_intercept" ] } ], "_readme": "https://github.com/aguerozz/spcompute/raw/HEAD/README.md", "_rundeps": [ "lattice", "Matrix" ], "_vignettes": [ { "source": "SPCompute-vignette.Rmd", "filename": "SPCompute-vignette.html", "title": "SPCompute", "engine": "knitr::rmarkdown", "headings": [ "Section 1: Compute power/sample size for binary traits", "Section 2: Compute power/sample size for continuous traits", "Section 3: Power/Sample Size Computation with Multiple Covariates" ], "created": "2022-02-28 20:08:07", "modified": "2023-01-24 17:19:09", "commits": 2 } ], "_score": 3.8129133566428557, "_indexed": true, "_nocasepkg": "spcompute", "_universes": [ "aguerozz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.3", "date": "2026-05-20T07:35:21.000Z", "distro": "noble", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "ce6eaedac1b06ba3836175f02b160e2d0e3ad1cafc0fa9a92cafce421bf8d686", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.6.0", "os": "linux", "version": "1.0.3", "date": "2026-05-20T07:35:16.000Z", "distro": "noble", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "21974b2e24f1cb69e65a3ff9b97b41c2ef021166dcb03068fea20405234c717c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.5.3", "os": "mac", "version": "1.0.3", "date": "2026-05-20T07:35:36.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "481638e8977279dfdf0fd28782e87859c581c375d39ba5c11e978edcf92abc3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.6.0", "os": "mac", "version": "1.0.3", "date": "2026-05-20T07:35:38.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "f30a7af0378d9d8681004a8642c694e8ee344f6f235d7ed2ba7e172dcaa7fbce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.7.0", "os": "win", "version": "1.0.3", "date": "2026-05-20T07:34:33.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "d3e63c45d9877aab0f0f4e4365a546c8ee027fcabfc817980cda0354ed5a0598", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.5.3", "os": "win", "version": "1.0.3", "date": "2026-05-20T07:34:36.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "0e9bceb97ec3bb3305ecfd11650682a9ddf4c0d97387b56e108ff8a586be447f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.6.0", "os": "win", "version": "1.0.3", "date": "2026-05-20T07:34:28.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "d3e337d9d96a1349021a2665ee71fc78b02bd09dee8c229bf0d9e4a29bc4a761", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.3", "date": "2026-06-02T13:49:55.000Z", "commit": "25648f47a3a1fb226f257455ab3bb345af1a5c75", "fileid": "f91c60c11d39bffb402b91ec930f8147aa853cf8b885f0403ea87509a4846ccb", "status": "success", "buildurl": "https://github.com/r-universe/aguerozz/actions/runs/26148067635" } ] }